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Species delimitation in Pleurotus eryngii species-complex inferred from ITS and EF-1α gene sequences.

机译:从ITS和EF-1α基因序列推断出杏鲍菇属菌群的种间定界。

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摘要

Taxon delimitation in Pleurotus eryngii species-complex was investigated using an independent loci-based approach. A\udcollection of 47 Pleurotus strains was analyzed through nucleotide sequences of the internal transcribed spacer region (ITS1, 5.8S and ITS2) and M13 minisatellite fragments. A sub-sample made of 12 clones representative of the ITS phylogenetic clusters was sequenced to elucidate variations in the elongation factor 1 alpha gene (EF1-α). A unique clade made of three evolutionary units, i.e. Chinese nebrodensis, Sicilian nebrodensis and eryngii-ferulae from the Mediterranean region, was revealed. The evolutionary genetic divergences were highly correlated (r = 0.86) for both genes. The average number of\udbase substitutions per site was higher for EF1-α gene (0.013) than for ITS (0.001). M13 minisatellite polymorphism marked a clear association between strains and geographic origin but its resolution in taxa delimitation was low. Data from ITS\udand EF1-α genes supported the hypothesis that the species-complex is a unique gene-pool. Within the species-complex, the nebrodensis type is characterized by a level of nucleotide substitutions lower than as expected for its ranking at a species level.
机译:使用独立的基于基因座的方法调查了杏鲍菇菌种复杂中的分类群界定。通过内部转录间隔区(ITS1、5.8S和ITS2)和M13小卫星片段的核苷酸序列分析了47个侧耳菌菌株的收集。对由代表ITS系统发生簇的12个克隆组成的子样本进行测序,以阐明延伸因子1α基因(EF1-α)的变异。揭示了一个由三个进化单位组成的独特进化枝,即来自地中海地区的中国nebrodensis,西西里nebrodensis和eryngii-ferulae。两种基因的进化遗传差异高度相关(r = 0.86)。 EF1-α基因每个位点的平均碱基替换数目(0.013)比ITS(0.001)高。 M13小卫星多态性标志着菌株与地理起源之间的明确联系,但其在分类单元划界中的分辨率很低。来自ITS \ udandEF1-α基因的数据支持以下假设:物种复合体是独特的基因池。在物种复合体中,nebrodensis类型的特征是核苷酸取代水平低于其在物种水平上的排名所期望的水平。

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    G. FIGLIUOLO; S. MANG;

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  • 年度 2010
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  • 正文语种 eng
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